Berkeley Lab's Environmental Genomics & Systems Biology Division has an opening for a Computational Biology Postdoctoral Scholar. The incumbent will work with the management and Product Team Leads in collaboration with targeted users to develop advanced functionality and analytics in KBase, whose goal is to develop predictive biology for microbes, plants and their communities. This role will involve developing new methodologies, working with external teams to package, test, and apply tools and data effectively in KBase, and help drive these efforts to publishable scientific findings. The goals of these publications are to highlight to scientists publically available new functionality, data, and analysis in KBase. You may also participate in defining the underlying data science frameworks being developed in the KBase platform and in collaboration with the Joint Genome Institute.
What You Will Do:
With KBase leadership, collaborate with targeted KBase users and other stakeholders to identify high value science that can be performed with suitable extensions to the KBase platform and data sets.
Develop, package and apply new and community computational methods in the KBase platform, which will be shared and disseminated across the microbiome community.
Work with the KBase team to develop the integrated data science platform to support inference across system reference source and shared user data.
Work with targeted users to perform sophisticated analyses of heterogeneous biological data of plants, microbes and their communities to discover and predict biological function and behavior and compare against experimental observations.
Publish scientific papers in peer-reviewed journals and present findings at seminars and conferences.
Collaborate with other members of the project research team both internal and external to Berkeley Lab and develop new collaborations as appropriate to further the scientific goals of the program.
What is Required:
PhD within the last three years in computer science, data science, machine learning, chemical engineering, bioengineering, chemistry, biochemistry, chemical biology, plant biology, microbiology, bioinformatics, computational biology, or related field.
Strong background in programming and computational biology.
Strong track record in developing software tools.
Experience with modern statistics and machine learning.
Proven ability to perform independent research and organize data for publication and presentations.
Demonstrated ability to interact effectively with technical and scientific staff.
Ability to work independently and in a team environment.
Demonstrated ingenuity in dealing with complex problems.
Demonstrated strength and efficiency in technical writing.
Additional Desired Qualifications:
Familiar with software engineering best practices.
Familiar with Agile methodology.
The posting shall remain open until the position is filled.
This is a full time, 1 year, postdoctoral appointment with the possibility of renewal based upon satisfactory job performance, continuing availability of funds and ongoing operational needs. You must have less than 4 years paid postdoctoral experience. Salary for Postdoctoral positions depends on years of experience post-degree.
There are multiple openings for this position.
Full-time, M-F, exempt (monthly paid) from overtime pay.
This position is represented by a union for collective bargaining purposes.
Salary will be predetermined based on postdoctoral step rates.
This position may be subject to a background check. Any convictions will be evaluated to determine if they directly relate to the responsibilities and requirements of the position. Having a conviction history will not automatically disqualify an applicant from being considered for employment.
Work will be primarily performed at West Berkeley Biocenter (Potter St.) -- Bldg. 977, 717 Potter St., Berkeley, CA.
Berkeley Lab (LBNL) addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy's Office of Science.
Equal Employment Opportunity: Berkeley Lab is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, or protected veteran status. Berkeley Lab is in compliance with the Pay Transparency Nondiscrimination Provision under 41 CFR 60-1.4. Click here to view the poster and supplement: "Equal Employment Opportunity is the Law."
Internal Number: 85019
About Lawrence Berkeley National Laboratory
In the world of science, Lawrence Berkeley National Laboratory (Berkeley Lab) is synonymous with excellence. Thirteen scientists associated with Berkeley Lab have won the Nobel Prize. Fifty-seven Lab scientists are members of the National Academy of Sciences (NAS), one of the highest honors for a scientist in the United States. Thirteen of our scientists have won the National Medal of Science, our nation's highest award for lifetime achievement in fields of scientific research. Eighteen of our engineers have been elected to the National Academy of Engineering, and three of our scientists have been elected into the Institute of Medicine. In addition, Berkeley Lab has trained thousands of university science and engineering students who are advancing technological innovations across the nation and around the world. Berkeley Lab is a member of the national laboratory system supported by the U.S. Department of Energy through its Office of Science. It is managed by the University of California (UC) and is charged with conducting unclassified research across a wide range of scientific disciplines. Located on a 200-acre site in the hills above the UC Berkeley campus that offers spectacular... views of the San Francisco Bay, Berkeley Lab employs approximately 4,200 scientists, engineers, support staff and students. Its budget for 2011 is $735 million, with an additional $101 million in funding from the American Recovery and Reinvestment Act, for a total of $836 million. A recent study estimates the Laboratory's overall economic impact through direct, indirect and induced spending on the nine counties that make up the San Francisco Bay Area to be nearly $700 million annually. The Lab was also responsible for creating 5,600 jobs locally and 12,000 nationally. The overall economic impact on the national economy is estimated at $1.6 billion a year. Technologies developed at Berkeley Lab have generated billions of dollars in revenues, and thousands of jobs. Savings as a result of Berkeley Lab developments in lighting and windows, and other energy-efficient technologies, have also been in the billions of dollars. Berkeley Lab was founded in 1931 by Ernest Orlando Lawrence, a UC Berkeley physicist who won the 1939 Nobel Prize in physics for his invention of the cyclotron, a circular particle accelerator that opened the door to high-energy physics. It was Lawrence's belief that scientific research is best done through teams of individuals with different fields of expertise, working together. His teamwork concept is a Berkeley Lab legacy that continues today.