Berkeley Lab's Joint Genome Institute Division has an opening for a Systems Engineering Manager. The DOE Joint Genome Institute is a national scientific user facility that supports the mission of the Office of Biological Environmental Research. Understanding how organisms function so these functions can be predicted, modified and harnessed to address critical challenges has been a central driver of modern biology. Advances in genomics, synthetic biology, high throughput phenotyping, structural biology, and computational biology have allowed significant progress toward this goal for specific organisms of interest and are likely to continue to do so for the foreseeable future. The DOE JGI will continue to play a leadership role in the creation and analysis of multi-omics data that enables discovery in the areas of environmental genomics, biofuels, and other DOE BER mission areas. Informatics, data science, and computing are at the core of these strategic efforts.
Reporting to the JGI Chief Informatics Office and Data Science and Informatics Leader, the Systems Engineering Manager will manage the teams responsible for building JGI's centralized infrastructure components including identity and access management, data management, user interface, and user experience design, as well as workflow management. These teams will be managed according to Agile principles with a focus on staff ownership, accountability, as well as, rapid prototyping and deployment. The Systems Engineering Manager, with the support of the CIO, will work across the JGI to lead the collection of requirements for the centralized systems. The Systems Engineering Manager will support the CIO in the development and execution of the strategy for data science and informatics.
Represent the systems engineering group in relevant JGI reviews, national and international activities as well as within the DOE National Laboratory system. As a member of the JGI Management Team, actively participate in strategic planning for the organization and provide leadership for JGI initiatives.
What You Will Do:
Provide effective line management and support to a group of approximately 15 computer science engineers by hiring excellent staff and conducting performance management. Assure staff meet goals, provide both positive and constructive feedback to staff and keep them motivated.
Assure JGI's infrastructure services are high performing, scalable and leverage HPC resources in order to meet the needs of JGI's User community.
Work closely with other teams at JGI to enable applications to run seamlessly across JGI's supercomputing, storage systems, web gateways and database resources.
Contribute to JGI's data science and informatics strategy, as well as JGI strategic planning.
Continuously evaluate new technologies and make recommendations on future technical directions for the center.
Assure all staff members have career growth goals.
Create and develop a vision and strategy for the systems engineering group.
Maintain a work environment that embraces diversity and fosters creativity and innovation, and ensures that DOE and Laboratory rules and policies are observed.
With the CIO and Systems Engineering Leadership Team, develop project plans and lead efforts to ensure software engineering projects are delivered in a timely fashion.
Help with management and reporting on activities and progress for JGI-wide software engineering projects.
What is Required:
Demonstrated excellence in the management of progressively larger and more complex technical groups, including a minimum of 3+ years of experience in a supervisory role of complex computer systems or networking unit.
Proven background in bioinformatics and high-performance computing and a broad computational science background, including knowledge of Unix/Linux, data management systems, RESTful API development, as well as, software engineering best practices. Must have experience developing or overseeing scientific software. Must have experience with NGS data.
Experience with user-centered design or the gathering of user requirements.
Experience with software project management.
Familiarity with common software project management tools, devops practices, as well as, bioinformatics, and computational biology.
Demonstrated ability to lead a team-oriented organization and attract, retain and develop a talented and diverse staff. Ability to foster a positive work relationship and resolve technical and personal conflicts with diplomacy and tact.
Experience running or developing large scale scalable systems in a production environment.
Deep and broad knowledge of computing and data infrastructure technologies such as scalable databases, authentication tools, web services, and networking.
Ability to gather requirements from the user community and turn requirements into system and infrastructure characteristics.
Additional Desired Qualifications:
A master's or Ph.D. degree in related fields.
Knowledge of existing/emerging technologies such as the Elastic Search/Logstash/Kibana (ELK) stack, authentication systems, databases, orchestration infrastructure
Familiarity with DevOps best practices and a willingness to learn Agile software project management practices.
The posting shall remain open until the position is filled.
This is a full time, 2 year, term appointment with the possibility of extension or conversion to Career appointment based upon satisfactory job performance, continuing availability of funds and ongoing operational needs.
Full-time, M-F, exempt (monthly paid) from overtime pay.
Salary is commensurate with experience.
This position may be subject to a background check. Any convictions will be evaluated to determine if they directly relate to the responsibilities and requirements of the position. Having a conviction history will not automatically disqualify an applicant from being considered for employment.
Work will primarily be performed at DOE Joint Genome Institute (JGI) — 2800 Mitchell Dr., Walnut Creek, CA.
Equal Employment Opportunity: Berkeley Lab is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, or protected veteran status. Berkeley Lab is in compliance with the Pay Transparency Nondiscrimination Provision under 41 CFR 60-1.4. Click here to view the poster and supplement: "Equal Employment Opportunity is the Law."
Berkeley Lab (LBNL) addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy's Office of Science.
Internal Number: 85106
About Lawrence Berkeley National Laboratory
In the world of science, Lawrence Berkeley National Laboratory (Berkeley Lab) is synonymous with excellence. Thirteen scientists associated with Berkeley Lab have won the Nobel Prize. Fifty-seven Lab scientists are members of the National Academy of Sciences (NAS), one of the highest honors for a scientist in the United States. Thirteen of our scientists have won the National Medal of Science, our nation's highest award for lifetime achievement in fields of scientific research. Eighteen of our engineers have been elected to the National Academy of Engineering, and three of our scientists have been elected into the Institute of Medicine. In addition, Berkeley Lab has trained thousands of university science and engineering students who are advancing technological innovations across the nation and around the world. Berkeley Lab is a member of the national laboratory system supported by the U.S. Department of Energy through its Office of Science. It is managed by the University of California (UC) and is charged with conducting unclassified research across a wide range of scientific disciplines. Located on a 200-acre site in the hills above the UC Berkeley campus that offers spectacular... views of the San Francisco Bay, Berkeley Lab employs approximately 4,200 scientists, engineers, support staff and students. Its budget for 2011 is $735 million, with an additional $101 million in funding from the American Recovery and Reinvestment Act, for a total of $836 million. A recent study estimates the Laboratory's overall economic impact through direct, indirect and induced spending on the nine counties that make up the San Francisco Bay Area to be nearly $700 million annually. The Lab was also responsible for creating 5,600 jobs locally and 12,000 nationally. The overall economic impact on the national economy is estimated at $1.6 billion a year. Technologies developed at Berkeley Lab have generated billions of dollars in revenues, and thousands of jobs. Savings as a result of Berkeley Lab developments in lighting and windows, and other energy-efficient technologies, have also been in the billions of dollars. Berkeley Lab was founded in 1931 by Ernest Orlando Lawrence, a UC Berkeley physicist who won the 1939 Nobel Prize in physics for his invention of the cyclotron, a circular particle accelerator that opened the door to high-energy physics. It was Lawrence's belief that scientific research is best done through teams of individuals with different fields of expertise, working together. His teamwork concept is a Berkeley Lab legacy that continues today.